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1

Impact of viral selected mutations on T cell mediated immunity in chronically evolving and self limiting acute HCV infection

Silvia Guglietta, Anna Rosa Garbuglia, Leonidas Salichos, Lionello Ruggeri, Antonella Folgori, Maria Paola Perrone, Cristina Camperio, Vincenzo Mellace, Giuseppe Maio, Patrizia Maio, Maria Rosaria Cap

Journal:

Year:

2009

Language:

english

File:

PDF, 747 KB

english, 2009

2

The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

John G. Gibbons, Leonidas Salichos, Jason C. Slot, David C. Rinker, Kriston L. McGary, Jonas G. King, Maren A. Klich, David L. Tabb, W. Hayes McDonald, Antonis Rokas

Journal:

Current Biology

Year:

2012

Language:

english

File:

PDF, 1.26 MB

english, 2012

3

The diversity and evolution of circadian clock proteins in fungi

Salichos, L., Rokas, A.

Journal:

Year:

2010

Language:

english

File:

PDF, 3.60 MB

english, 2010

4

Inferring ancient divergences requires genes with strong phylogenetic signals

Salichos, Leonidas, Rokas, Antonis

Journal:

Year:

2013

Language:

english

File:

PDF, 316 KB

english, 2013

5

Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees

Salichos, L., Stamatakis, A., Rokas, A.

Journal:

Molecular Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 521 KB

english, 2014

6

Transcriptome-wide analysis of small RNA expression in early zebrafish development

Wei, C., Salichos, L., Wittgrove, C. M., Rokas, A., Patton, J. G.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.31 MB

english, 2012

7

The diversity and evolution of circadian clock proteins in fungi

Leonidas Salichos and Antonis Rokas

Journal:

Year:

2010

Language:

english

File:

PDF, 2.09 MB

english, 2010

8

The real cost of sequencing: scaling computation to keep pace with data generation

Muir, Paul, Li, Shantao, Lou, Shaoke, Wang, Daifeng, Spakowicz, Daniel J, Salichos, Leonidas, Zhang, Jing, Weinstock, George M., Isaacs, Farren, Rozowsky, Joel, Gerstein, Mark

Journal:

Year:

2016

File:

PDF, 627 KB

2016

9

The real cost of sequencing: scaling computation to keep pace with data generation

Muir, Paul, Li, Shantao, Lou, Shaoke, Wang, Daifeng, Spakowicz, Daniel J, Salichos, Leonidas, Zhang, Jing, Weinstock, George M., Isaacs, Farren, Rozowsky, Joel, Gerstein, Mark

Journal:

Year:

2016

Language:

english

File:

PDF, 627 KB

english, 2016

10

Computing the Internode Certainty and related measures from partial gene trees.

Kobert, Kassian, Salichos, Leonidas, Rokas, Antonis, Stamatakis, Alexandros

Journal:

Molecular Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 453 KB

english, 2016

11

EMI datalib - joining the best of ARC and gLite data libraries

Nilsen, J K, Cameron, D, Devresse, A, Molnar, Zs, Nagy, Zs, Salichos, M

Journal:

Journal of Physics Conference Series

Year:

2012

Language:

english

File:

PDF, 602 KB

english, 2012

12

Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation

Muir, Paul, Li, Shantao, Lou, Shaoke, Wang, Daifeng, Spakowicz, Daniel J., Salichos, Leonidas, Zhang, Jing, Weinstock, George M., Isaacs, Farren, Rozowsky, Joel, Gerstein, Mark

Journal:

Year:

2016

Language:

english

File:

PDF, 427 KB

english, 2016

13

Providing global WLCG transfer monitoring

Andreeva, J, Dieguez Arias, D, Campana, S, Flix, J, Keeble, O, Magini, N, Molnar, Z, Oleynik, D, Petrosyan, A, Ro, G, Saiz, P, Salichos, M, Tuckett, D, Uzhinsky, A, Wildish, T

Journal:

Journal of Physics Conference Series

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

14

Integrating network and transfer metrics to optimize transfer efficiency and experiment workflows

McKee, S., Babik, M., Campana, S., Girolamo, A. Di, Wildish, T., Closier, J., Roiser, S., Grigoras, C., Vukotic, I., Salichos, M., De, Kaushik, Garonne, V., Cruz, J.A.D., Forti, A., Walker, C.J., Rand

Journal:

Journal of Physics Conference Series

Year:

2015

Language:

english

File:

PDF, 815 KB

english, 2015

15

FTS3: Quantitative Monitoring

Riahi, H, Salichos, M, Keeble, O, Andreeva, J, Ayllon, A A, Girolamo, A Di, Magini, N, Roiser, S, Simon, M K

Journal:

Journal of Physics Conference Series

Year:

2015

Language:

english

File:

PDF, 3.88 MB

english, 2015

16

Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture

Kent, B. N., Salichos, L., Gibbons, J. G., Rokas, A., Newton, I. L. G., Clark, M. E., Bordenstein, S. R.

Journal:

Genome Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 401 KB

english, 2011

17

FTS3: New Data Movement Service For WLCG

Ayllon, A A, Salichos, M, Simon, M K, Keeble, O

Journal:

Journal of Physics Conference Series

Year:

2014

Language:

english

File:

PDF, 963 KB

english, 2014

18

Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade

Salichos, Leonidas, Rokas, Antonis, Fairhead, Cecile

Journal:

Year:

2011

Language:

english

File:

PDF, 1.00 MB

english, 2011

19

A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference

Shen, Xing-Xing, Salichos, Leonidas, Rokas, Antonis

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 895 KB

english, 2016

20

Alpha, Beta, gamma human PapillomaViruses (HPV) detection with a different sets of primers in oropharyngeal swabs, anal and cervical samples

Sias, Catia, Salichos, Leonidas, Lapa, Daniele, Del Nonno, Franca, Baiocchini, Andrea, Capobianchi, Maria Rosaria, Garbuglia, Anna Rosa

Journal:

Virology Journal

Year:

2019

Language:

english

File:

PDF, 858 KB

english, 2019

21

Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences

Kumar, Sushant, Warrell, Jonathan, Li, Shantao, McGillivray, Patrick D., Meyerson, William, Salichos, Leonidas, Harmanci, Arif, Martinez-Fundichely, Alexander, Chan, Calvin W.Y., Nielsen, Morten Muhli

Journal:

Year:

2020

Language:

english

File:

PDF, 4.48 MB

english, 2020